<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="../../xsl/transcript_eng.xsl"?>
<tt xmlns:tts="http://www.w3.org/2006/04/ttaf1#styling" xml:lang="en">
  <head>
    <styling>
      <style id="defaultSpeaker" tts:fontSize="12px" tts:fontFamily="SansSerif" tts:fontWeight="normal" tts:fontStyle="normal" tts:textDecoration="none" tts:color="white" tts:backgroundColor="black" tts:textAlign="left" />
      <style id="defaultCaption" tts:textAlign="center" />
    </styling>
  </head>
  <body id="thebody" style="defaultCaption">
    <div xml:lang="en">
	<video_title>Why is it so hard to reconstruct Neanderthal genes?</video_title>
	<video_subject_name>Svante Pääbo | Director, Evolutionary Genetics</video_subject_name>
	<video_subject_title>Max Planck Institute for Evolutionary Anthropology</video_subject_title>
      <p begin="0:00:01.13" end="0:00:07.57">What we are involved in now, in terms of the Neanderthals, is a project where we eventually</p>
      <p begin="0:00:07.61" end="0:00:11.88">want to determine the complete genome sequence of the Neanderthal.</p>
      <p begin="0:00:11.91" end="0:00:15.12">And that, of course, has many complications with it.</p>
      <p begin="0:00:15.15" end="0:00:18.85">One of them is that the Neanderthal is so closely related to us</p>
      <p begin="0:00:18.89" end="0:00:25.16">that, for many, many parts of our genome, we will turn out to be identical to the Neanderthal.</p>
      <p begin="0:00:25.89" end="0:00:29.06">And that makes it very hard, if we have a Neanderthal bone,</p>
      <p begin="0:00:29.10" end="0:00:36.50">to distinguish between the truly endogenous Neanderthal DNA and contaminating DNA</p>
      <p begin="0:00:36.54" end="0:00:40.41">from, say, an archeologist or a museum curator who have handled the bone</p>
      <p begin="0:00:40.44" end="0:00:42.64">or from ourselves in the laboratory.</p>
      <p begin="0:00:43.64" end="0:00:48.85">So what we then do is to look through very many Neanderthal bones that have been found</p>
      <p begin="0:00:48.88" end="0:00:55.96">and try also to get bones that have been recently excavated and not handled a lot by humans.</p>
      <p begin="0:00:55.99" end="0:01:02.46">When they see that they find a bone, they try to extricate it from the matrix,</p>
      <p begin="0:01:02.50" end="0:01:07.27">or from the soil where it is, wearing, actually, gloves and protective clothing,</p>
      <p begin="0:01:07.30" end="0:01:11.14">and freezing it directly, so that it can go into our clean-room</p>
      <p begin="0:01:11.17" end="0:01:15.48">and you can remove one part of the bone for the DNA extraction,</p>
      <p begin="0:01:15.51" end="0:01:19.31">and then go on and clean the rest of the bone as one would normally do</p>
      <p begin="0:01:19.35" end="0:01:21.18">when you find a bone at an excavation.</p>
      <p begin="0:01:21.21" end="0:01:27.02">Because it turns out that a big source of contamination is, for example,</p>
      <p begin="0:01:27.05" end="0:01:31.56">the water that is used to clean the bone when you find it.</p>
      <p begin="0:01:31.59" end="0:01:37.60">So it’s very valuable if one can avoid having the bone cleaned when it’s first found.</p>
    </div>
  </body>
</tt>
