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Agar Cell Diffusion

Science Snack
Agar Cell Diffusion
Use cubes of agar to investigate how size impacts diffusion.
Agar Cell Diffusion
Use cubes of agar to investigate how size impacts diffusion.

All biological cells require the transport of materials across the plasma membrane into and out of the cell. By infusing cubes of agar with a pH indicator, and then soaking the treated cubes in vinegar, you can model how diffusion occurs in cells. Then, by observing cubes of different sizes, you can discover why larger cells might need extra help to transport materials.

Tools and Materials
  • Agar-agar powder
  • Digital scale
  • Graduated cylinder
  • Water
  • Whisk or fork
  • Microwaveable bowl or container at least 500ml in volume
  • Microwave (not shown)
  • Hot pad or oven mitt
  • Heat-safe surface
  • pH indicator, such as bromothymol blue or phenolphthalein
  • Ammonia
  • Small glass baking pan or cube-shaped silicone ice-cube molds
  • Clear plastic metric ruler
  • Sharp knife
  • Clear container for immersing agar cubes
  • Vinegar
  • Calculator
  • Pencil and notepaper
  • Spoon
  • White paper or plate
  • Timers
  1. Measure out 1.6 g of agar-agar and 200 ml water. Mix them together with a whisk or fork in a large microwave-safe bowl.
  2. Heat the solution in the microwave on high for 30 seconds. Remove to a heat-safe surface using a hot pad or oven mitts, stir, and return to the microwave for 30 seconds. Repeat this process until the mixture boils. (Keep your eye on it as it can boil over very easily!) When done, remove the container, and set it on a trivet or other heat-safe surface.
  3. Choose ONE pH indictor to work with (either bromothymol blue or phenolphthalein) and add a few drops of it to the agar solution. ​If you’re using bromothymol blue, add enough indicator so that the mixture turns blue. If it has a greenish hue, add ammonia a drop at a time until it is blue (see photo below). If you're using phenolphthalein, add enough indicator so that the mixture turns pale pink. Add ammonia drop by drop until the mixture turns (and remains) a bright pink color (see photo below).

  1. Carefully pour the agar solution into silicone ice-cube molds or a small glass baking pan. Make sure the agar block(s) will be at least 3 cm deep when they solidify. If you don’t have enough solution, make more using the ratio of 0.8 g agar-agar powder to 100 ml water.
  2. Let the agar cool until it solidifies (an hour is usually sufficient). Remove the agar blocks from the molds or cut in the pan with a sharp knife to obtain two sets of cubes of three sizes: 1 x 1 x 1 cm, 2 x 2 x 2 cm, and 3 x 3 x 3 cm. If you're using bromothymol blue, you should have two sets of blue cubes. If you're using phenolphthalein, you should have two sets of pink cubes. The sets need to match in order to compare the color change later on in the Snack.

To Do and Notice

Place a few millileters of the pH indicator into a small container (either bromothymol blue or phenolphthalein). Using a dropper, add a few drops of vinegar. What do you notice?

As an acid, vinegar has a large number of hydrogen ions. When the hydrogen ions come into contact with the pH indicator, the solution changes color.

Fill a clear container with vinegar to a 3-cm depth. Place one agar cube of each size in the vinegar, making sure the blocks are submerged. The untreated blocks (one of each size) will be used for comparison. What do you think will happen to each cube?

Determine the surface area and volume of each cube. To find the surface area, multiply the length of a side of the cube by the width of a side of the cube. This will give you the area of one face of the cube. Multiply this number by 6 (the number of faces on a cube) to determine the total surface area. To find the volume, multiply the length of the cube by its width by its height. Then determine the surface-area-to-volume ratios by dividing the surface area by the volume for each cube.

How will you know if hydrogen ions are moving into the cube? How long do you think it will take the hydrogen ions to diffuse fully into each of the cubes? Why? How would you be able to tell when the vinegar has fully penetrated the cube?

After 5 minutes, remove the cubes from the vinegar with a plastic spoon, and place them on white paper or on a white plate. Compare the treated cubes to the untreated cubes and observe any color changes.

How much vinegar has been absorbed by each treated cube? One way to measure this is to calculate the percentage of the volume of the cube that has been penetrated by the vinegar. (Hint: It may be easier to first consider the volume that has not been penetrated by the vinegar—the portion that has not yet changed color.) Do you want to adjust any of your predictions for the diffusion times? What are your new predictions?

Carefully return all of the treated cubes to the vinegar. Continue checking the vinegar-soaked cubes every 5 minutes by removing them to determine the percentage of the cube that has been penetrated by the vinegar. Continue this process until the vinegar has fully penetrated the cubes. Make a note of the time when this occurs.

What do you notice about the percentage of penetration for each of the cubes at the different time intervals? What relationships do you notice between surface area, volume, surface-area-to-volume ratio, and percentage penetration? What does this say about diffusion as an object gets larger?

What’s Going On?

Biological cells can only survive if materials can move in and out of them. In this Snack, you used cubes of agar to visualize how diffusion changes depending on the size of the object taking up the material.

Diffusion occurs when molecules in an area of higher concentration move to an area of lower concentration. As hydrogen ions from the vinegar move into the agar cube, the color of the cube changes allowing you to see how far they have diffused. While random molecular motion will cause individual molecules and ions to continue moving back and forth between the cube and the vinegar solution, the overall concentrations will remain in equilibrium, with equal concentrations inside and outside the agar cube.

How did you find the percentage of the cube that was penetrated by the hydrogen ions at the various time intervals? One way to do this is to start with the volume of the cube that has not been penetrated—in other words, the part in the center that has not yet changed color. To determine the volume of this inner cube, measure the length of this inner cube and multiply it by the width and height. Subtract this from the original volume of the cube and you obtain the volume of the cube that has been penetrated. By dividing this number by the original volume and multiplying by 100%, you can determine the percentage penetration for each cube.

You may have noticed that the bigger the vinegar-soaked cube gets, the time it takes for additional vinegar to diffuse into the cube also increases—but not in a linear fashion. In other words, if the cube dimensions are doubled, the time it takes for the hydrogen ions to completely diffuse in more than doubles. When you triple the size, the time to diffuse MUCH more than triples. Why would this happen?

As the size of an object increases, the volume also increases, but by more than you might think. For example, when the cube doubles from a length of 1 cm to a length of 2 cm, the surface area increase by a factor of four, going from 6 cm2 (1 cm x 1 cm x 6 sides) to 24 cm2 (2 cm x 2 cm x 6 sides). The volume, though, increases by a factor of eight, increasing from 1 cm3 (1cm x 1 cm x 1 cm) to 8 cm3 (2 cm x 2 cm x 2 cm).

Because the volume is increasing at a greater factor than the surface area, the surface-area-to-volume ratio decreases. As the cube size increases, the surface-area-to-volume ratio decreases (click to enlarge the table below). The vinegar can only enter the cube through its surface, so as that ratio decreases, the time it takes for diffusion to occur throughout the whole volume increases significantly.

\hline \begin{array}{c}
\text { Cube Side } \\
\text { Length }
\end{array} & \text { Surface Area } & \text { Volume } & \begin{array}{c}
\text { Surface-area- } \\
\text { to-volume ratio }
\end{array} \\
\hline 1 \mathrm{~cm} & 6 \mathrm{~cm}^2 & 1 \mathrm{~cm}^3 & 6 \mathrm{~cm}^{-1} \\
\hline 2 \mathrm{~cm} & 24 \mathrm{~cm}^2 & 8 \mathrm{~cm}^3 & 3 \mathrm{~cm}^{-1} \\
\hline 3 \mathrm{~cm} & 54 \mathrm{~cm}^2 & 27 \mathrm{~cm}^3 & 2 \mathrm{~cm}^{-1} \\

Anything that comes into a cell (such as oxygen and food) or goes out of it (such as waste) must travel across the cell membrane. As cells grow larger, the ratio of surface area to volume decreases dramatically, just like in your agar cubes. Larger cells must still transport materials across their membranes, but have a larger volume to supply and a proportionately smaller surface area through which to do so.

Bacterial cells are fairly small and have a comparatively larger surface-area-to-volume ratio. Eukaryotic cells, such as those in plants and animals, are much larger, but have additional structures to help them conduct the required amount of transport across membranes. A series of membrane-bound structures continuous with the plasma membrane, such as the endoplasmic reticulum, provide additional surface area inside the cell, allowing sufficient transport to occur. Even with these strategies, though, there are upper limits to cell size.

Going Further

While this Snack investigates how the size of an agar cube impacts diffusion, the shape of each cube remains consistent. Biological cells, however, come in different shapes. To see how different shapes of “cells” affect diffusion rates, try various shapes of agar solids. Ice-cube molds can be found in spherical and rod shapes in addition to cubes. How does the shape impact the surface-area-to-volume ratios?

Teaching Tips

This Snack fits well into a series of investigations on osmosis and diffusion. The Naked Egg Snack will allow students to explore how concentration gradients power movement of materials into and out of cells. The Cellular Soap Opera Snack will help students consider the types of materials that move through cell membranes.

To help students better understand the concepts of surface area, volume, and surface-area-to-volume ratio, have them build models with plastic centimeter cubes. Physical models can help make these ideas more concrete. Students can also graph class data to better understand the mathematical relationships involved.

If there’s not enough time within a class period for the largest cubes to be fully penetrated by the hydrogen ions present in the vinegar, students can make note of the percentage of the cube that has been penetrated by the vinegar and use that data to extrapolate a result. Alternatively, students in the following period may be able to note the time for the previous class.

Agar-agar comes as a powder and can be purchased online or at markets featuring Asian foods. Unflavored gelatin can be used as a substitute, but is more difficult to handle. To make cubes from gelatin, add boiling water (25% less than the amount recommended on the package) to the gelatin powder, stir, and refrigerate overnight. You may need to experiment with the ratio of water to gelatin to achieve the perfect consistency.

Cabbage juice can be used as an inexpensive alternative to commercial pH indicator solutions. To make cabbage juice indicator, pour boiling water over chopped red cabbage and let it sit for 10 minutes. Strain out the cabbage, and use the remaining purple water to mix with the agar powder.